apaeffgen
Backups and application exports are different things.
A backup is a copy of a r3 instance. It includes the database, uploaded files, and so on. With backups you can recover your r3 instance to another system, keeping all your installed applications & data. For a guide on how to do that, you can check here.
An application export stores the structure of a single r3 application as JSON file, together with all r3 applications that the app is dependent on, compressed as a zip file (with *.rei3 extension). The JSON files for all dependencies are stored in the transfer directory.
Application exports serve to transfer an application version to another r3 instance. Usually to install or upgrade the target version of the application. It does not contain any data, besides preset records. The same r3 export can be used to rollout new versions on many r3 instances, regardless of what data is stored there - it´s just the application structure.
What are you trying to do? Are you trying to move your r3 instance / test recovery? Or are you trying to export a version of your r3 application?